JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIWIL1_chr12_130332887_130377637	0/0	c0006	2586	3	0	0	3	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0007	2586	2	2	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0008	2586	2	2	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0009	2586	2	0	0	2	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0010	2586	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0011	2586	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0012	2586	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0013	2586	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0014	2586	1	0	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0015	2586	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0016	2586	1	0	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL2_chr8_22270316_22362568	1/0	c0001	2922	273	87	59	92	6	28	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0002	2922	5	4	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0003	2922	5	0	0	5	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0004	2922	4	4	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0005	2922	2	0	0	2	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0006	2922	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0007	2922	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0008	2922	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/1	c0009	2922	1	0	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0010	2922	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0011	2922	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	c0012	2922	1	1	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL3_chr22_24714034_24779720	0/0	c0001	2622	148	26	22	67	11	22	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0002	2622	70	12	13	33	3	9	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0003	2622	49	13	16	12	2	6	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	1/0	c0004	2622	25	0	5	15	0	4	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/1	c0005	2622	23	1	2	18	0	1	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0006	2622	10	0	0	10	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0007	2622	7	3	0	3	0	1	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0008	2622	6	6	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0009	2622	5	2	3	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0010	2622	4	0	4	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0011	2622	4	4	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0012	2622	4	4	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0013	2622	3	3	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0014	2622	2	2	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0015	2622	2	0	0	0	0	2	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0016	2622	2	1	1	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0017	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0018	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0019	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0020	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0021	2622	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0022	2622	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0023	2622	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0024	2622	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0025	2622	1	0	0	0	0	1	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0026	2622	1	0	1	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0027	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720