JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIWIL3_chr22_24714034_24779720	0/0	c0028	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0029	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0030	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0031	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0032	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0033	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0034	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0035	2622	1	0	0	0	0	1	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0036	2622	1	0	0	0	0	1	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0037	2622	1	0	1	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	c0038	2622	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL4_chr11_94562368_94626421	1/0	c0001	2559	121	4	27	68	7	14	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0002	2559	60	5	14	29	5	7	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/1	c0003	2559	52	11	3	31	0	6	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0004	2559	50	14	14	13	1	8	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0005	2559	18	15	0	0	0	3	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0006	2559	15	12	2	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0007	2559	14	14	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0008	2559	9	1	0	5	0	3	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0009	2559	7	4	0	1	0	2	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0010	2559	3	0	0	2	1	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0011	2559	3	2	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0012	2559	3	3	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0013	2559	2	0	0	2	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0014	2559	2	2	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0015	2559	2	1	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0016	2559	2	0	0	0	2	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0017	2559	1	0	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0018	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0019	2559	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0020	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0021	2559	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0022	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0023	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0024	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0025	2559	1	0	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0026	2559	1	0	0	0	0	1	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0027	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0028	2559	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0029	2559	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0030	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0031	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0032	2559	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0033	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0034	2559	1	0	0	0	0	1	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0035	2559	1	0	0	1	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0036	2559	1	0	0	0	0	1	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	c0037	2559	1	1	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PJA1_chrX_69155861_69170453	1/0	c0001	1767	268	65	36	132	5	29	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0002	1767	35	5	14	13	1	2	copy fasta	PJA1	chrX	69155861	69170453