JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF40_chr14_21065304_21095248	0/0	c0031	4560	1	0	0	0	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0032	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0033	4560	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0034	4560	1	0	0	0	0	1	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0035	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0036	4560	1	0	0	0	0	1	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0037	4560	1	0	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0038	4560	1	0	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	c0039	4560	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF4_chr2_130831914_131052253	0/0	c0001	5631	27	2	3	11	1	10	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0002	5631	12	0	2	7	1	2	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0003	5631	8	7	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0004	5631	7	1	0	1	0	5	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0005	5631	6	6	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0006	5631	5	5	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0007	5631	5	3	2	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0008	5631	4	3	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0009	5631	4	4	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0010	5631	4	0	0	3	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0011	5631	4	4	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0012	5631	4	0	4	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0013	5631	3	2	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0014	5631	3	3	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0015	5631	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0016	5631	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0017	5631	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0018	5631	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0019	5631	2	0	0	2	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/1	c0020	5631	2	0	0	1	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0021	5631	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0022	5631	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0023	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0024	5631	1	0	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0025	5631	1	0	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0026	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0027	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0028	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0029	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0030	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0031	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0032	5631	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0033	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0034	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0035	5631	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0036	5631	1	0	0	1	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0037	5631	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0038	5631	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0039	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0040	5631	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0041	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253