JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PJA1_chrX_69155861_69170453	0/1	c0003	1767	17	0	8	0	7	1	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0004	1767	4	4	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0005	1767	2	0	2	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0006	1767	1	0	0	0	0	1	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0007	1767	1	0	0	0	0	1	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0008	1767	1	1	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0009	1767	1	0	0	1	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0010	1767	1	0	0	1	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0011	1767	1	1	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0012	1767	1	1	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	c0013	1767	1	1	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA2_chr5_109329722_109414974	0/0	c0001	2127	120	65	9	43	0	3	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	c0002	2127	108	13	14	65	3	13	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/1	c0003	2127	88	5	33	17	9	23	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	1/0	c0004	2127	13	1	6	4	0	1	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	c0005	2127	7	6	1	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	c0006	2127	5	0	3	0	2	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	c0007	2127	2	0	0	2	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	c0008	2127	2	0	0	2	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	c0009	2127	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJVK_chr2_178446378_178467102	1/1	c0001	1059	352	82	62	158	13	35	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	c0002	1059	39	4	1	32	0	2	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	c0003	1059	8	4	2	0	0	2	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	c0004	1059	7	0	5	0	1	1	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	c0006	1059	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PKD1L1_chr7_47769614_47953466	0/0	c0001	8550	11	0	0	11	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0002	8550	9	0	3	5	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0003	8550	9	0	2	7	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0004	8550	7	0	3	1	1	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0005	8550	7	5	2	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0006	8550	6	0	1	5	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0007	8550	6	2	1	3	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0008	8550	5	5	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0009	8550	5	0	0	5	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0010	8550	5	0	0	5	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0011	8550	5	0	4	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0012	8550	5	0	2	2	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0013	8550	4	1	0	1	1	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0014	8550	4	3	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0015	8550	4	4	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0016	8550	4	0	0	3	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0017	8550	4	0	1	2	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0018	8550	4	0	1	3	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0019	8550	4	1	0	3	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0020	8550	3	0	0	1	0	2	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0021	8550	3	0	0	3	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0022	8550	3	3	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0023	8550	3	0	1	2	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0024	8550	3	1	1	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466