JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKD1L1_chr7_47769614_47953466	0/0	c0075	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0076	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0077	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0078	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0079	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0080	8550	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0081	8550	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0082	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0083	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0084	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0085	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0086	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0087	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0088	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0089	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0090	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0091	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0092	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0093	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0094	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0095	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0096	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0097	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0098	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0099	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0100	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0101	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0102	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0103	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0104	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0105	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0106	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0107	8550	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0108	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0109	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0110	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0111	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0112	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0113	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0114	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0115	8550	1	0	0	1	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0116	8550	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0117	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0118	8550	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0119	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0120	8550	1	0	0	0	1	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	1/0	c0121	8550	1	0	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0122	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0123	8550	1	0	1	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	c0124	8550	1	0	0	0	0	1	copy fasta	PKD1L1	chr7	47769614	47953466