JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKD1L3_chr16_71924538_72005402	0/0	c0006	5195	12	11	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0007	5199	11	11	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0008	5199	10	1	0	3	2	4	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0009	5199	10	0	1	6	0	3	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0010	5199	7	1	1	1	4	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0011	5199	7	0	3	4	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0012	5195	6	6	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/1	c0013	5199	5	0	3	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0014	5195	5	2	2	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0015	5199	5	0	0	5	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0016	5195	5	5	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0017	5199	4	0	0	3	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0018	5199	3	0	0	3	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0019	5199	2	0	0	0	0	2	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0020	5199	2	0	2	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0021	5199	2	0	0	2	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0022	5195	2	0	1	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0023	5199	2	0	0	2	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0024	5199	2	2	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0025	5199	2	2	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0026	5199	2	0	1	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0027	5199	2	0	0	2	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0028	5199	2	0	0	0	0	2	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0029	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0030	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0031	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0032	5199	1	0	0	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0033	5195	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0034	5199	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0035	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0036	5195	1	0	0	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0037	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0038	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0039	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0040	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0041	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0042	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0043	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0044	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0045	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0046	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0047	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0048	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0049	5195	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0050	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0051	5195	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0052	5199	1	0	0	0	1	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0053	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0054	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0055	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402