JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKD1L3_chr16_71924538_72005402	0/0	c0056	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	1/0	c0057	5199	1	0	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0058	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0059	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0060	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0061	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0062	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0063	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0064	5199	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0065	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0066	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0067	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0068	5202	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0069	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0070	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0071	5199	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0072	5195	1	0	1	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0073	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0074	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0075	5195	1	0	0	0	0	1	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0076	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0077	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0078	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0079	5195	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0080	5199	1	0	0	1	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0081	5199	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0082	5198	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0083	5198	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0084	5198	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0085	5198	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	c0086	5180	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1_chr16_2083708_2140898	0/0	c0001	12912	39	6	6	14	1	12	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0002	12912	8	0	0	4	0	4	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0003	12912	6	0	1	4	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0004	12913	6	0	4	2	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0005	12912	6	4	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0006	12912	5	0	3	0	2	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0007	12912	4	4	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0008	12912	4	0	2	2	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0009	12912	3	0	0	0	2	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0010	12912	3	3	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0011	12912	3	0	0	3	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0012	12912	2	0	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0013	12912	2	0	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0014	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0015	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0016	12912	2	1	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0017	12912	2	0	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0018	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0019	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898