JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKD1_chr16_2083708_2140898	0/0	c0020	12912	2	0	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0021	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0022	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0023	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0024	12912	2	0	0	2	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0025	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0026	12912	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0027	12912	2	0	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0028	12912	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0029	12899	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0030	12912	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0031	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0032	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0033	12912	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/1	c0034	12912	1	0	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0035	12932	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0036	12912	1	0	0	0	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0037	12912	1	0	0	0	1	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	1/0	c0038	12912	1	0	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0039	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0040	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0041	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0042	12913	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0043	12913	1	0	0	0	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0044	12912	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0045	12912	1	0	0	0	1	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0046	12913	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0047	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0048	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0049	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0050	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0051	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0052	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0053	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0054	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0055	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0056	12913	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0057	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0058	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0059	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0060	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0061	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0062	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0063	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0064	12913	1	0	0	0	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0065	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0066	12913	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0067	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0068	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0069	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898