JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKD1_chr16_2083708_2140898	0/0	c0120	12912	1	0	0	0	1	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0121	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0122	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0123	12912	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	c0124	12912	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD2L1_chr10_100283149_100335228	1/1	c0001	2418	181	37	38	74	7	23	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0002	2418	24	7	7	4	1	5	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0003	2418	16	4	1	9	0	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0004	2418	15	1	6	7	1	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0005	2418	14	13	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0006	2418	10	0	0	10	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0007	2418	5	3	0	0	2	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0008	2418	5	2	1	1	1	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0009	2418	5	4	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0010	2418	3	1	2	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0011	2418	2	0	0	0	0	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0012	2418	2	0	0	0	0	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0013	2418	2	0	0	0	0	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0014	2418	2	2	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0015	2418	2	2	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0016	2418	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0017	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0018	2418	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0019	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0020	2418	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0021	2418	1	0	0	1	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0022	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0023	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0024	2418	1	0	0	1	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0025	2418	1	0	0	1	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0026	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0027	2418	1	0	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0028	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0029	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0030	2418	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0031	2418	1	0	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0032	2418	1	0	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	c0033	2418	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L2_chr5_137884457_137947747	0/1	c0001	1875	251	49	53	114	6	28	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0002	1875	58	21	18	7	6	6	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0003	1875	10	10	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0004	1875	5	5	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0005	1875	3	1	0	0	2	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0006	1875	2	2	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	1/0	c0007	1875	2	1	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0008	1875	1	1	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0009	1875	1	0	0	1	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0010	1875	1	1	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0011	1875	1	0	1	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	c0012	1875	1	1	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747