JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKD2_chr4_88002635_88082777	1/0	c0001	2907	148	48	29	53	4	13	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0002	2907	82	0	14	61	2	5	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0003	2907	45	0	5	36	2	2	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/1	c0004	2907	30	10	11	0	2	6	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0005	2907	8	0	0	7	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0006	2907	4	4	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0007	2907	3	3	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0008	2910	2	2	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0009	2907	2	1	0	0	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0010	2907	2	0	2	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0011	2907	2	1	1	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0012	2907	2	2	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0013	2907	2	2	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0014	2907	1	0	1	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0015	2907	1	0	1	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0016	2910	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0017	2907	1	0	0	0	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0018	2907	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0019	2907	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0020	2907	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0021	2907	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0022	2907	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	c0023	2907	1	0	0	0	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKDCC_chr2_42043021_42063517	1/1	c0001	1482	144	6	29	84	7	16	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0002	1482	120	3	27	83	0	7	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0003	1482	85	26	15	21	7	16	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0004	1482	66	54	5	0	0	7	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0005	1482	3	0	1	0	0	2	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0006	1482	2	0	2	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0007	1482	2	2	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0008	1482	2	2	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0009	1482	2	0	2	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0012	1482	1	0	1	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0013	1482	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0014	1482	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	c0015	1482	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDREJ_chr22_46250663_46268343	1/1	c0001	6762	156	6	45	70	9	24	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0002	6762	42	21	7	9	2	3	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0003	6762	13	5	4	0	2	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0004	6756	12	12	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0005	6756	11	10	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0006	6756	9	3	2	0	0	4	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0007	6756	6	5	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0008	6756	6	6	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0009	6762	3	1	2	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0010	6756	3	3	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0011	6762	2	2	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0012	6756	2	1	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343