JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF4_chr2_130831914_131052253	0/0	c0042	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0043	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0044	5631	1	0	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0045	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0046	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0047	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0048	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0049	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0050	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0051	5631	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	1/0	c0052	5631	1	0	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0053	5631	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	c0054	5631	1	0	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF5_chr7_144350402_144385632	0/0	c0001	4794	41	1	13	21	1	5	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	1/0	c0002	4794	37	3	10	16	2	5	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0003	4794	25	1	11	2	4	7	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/1	c0004	4794	25	1	8	4	4	7	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0005	4794	17	2	1	11	2	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0006	4794	17	4	0	5	2	6	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0007	4794	10	10	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0008	4794	10	8	1	0	1	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0009	4794	6	6	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0010	4794	6	6	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0011	4794	5	5	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0012	4794	5	5	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0013	4794	4	4	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0014	4794	3	3	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0015	4794	3	0	1	0	2	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0016	4794	3	0	1	1	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0017	4794	3	0	0	3	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0018	4794	2	1	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0019	4795	2	0	1	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0020	4794	2	0	1	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0021	4794	2	0	0	2	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0022	4794	2	0	2	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0023	4794	2	2	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0024	4795	2	0	0	2	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0025	4794	2	0	2	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0026	4816	2	0	0	2	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0027	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0028	4795	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0029	4795	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0030	4794	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0031	4795	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0032	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0033	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0034	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0035	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0036	4794	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0037	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632