JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKDREJ_chr22_46250663_46268343	0/0	c0013	6762	2	0	0	0	0	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0014	6762	2	0	0	2	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0015	6762	2	0	1	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0016	6762	2	0	0	0	0	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0017	6762	2	2	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0018	6762	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0019	6762	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0020	6756	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0021	6756	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0022	6756	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0023	6756	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0024	6756	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0025	6762	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0026	6762	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0027	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0028	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0029	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0030	6762	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0031	6762	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0032	6762	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0033	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0034	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0035	6762	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0036	6762	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0037	6762	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0038	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0039	6762	1	0	0	0	1	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0040	6762	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0041	6762	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0042	6762	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0043	6762	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0044	6762	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0045	6762	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	c0046	6762	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKHD1L1_chr8_109357461_109542207	0/0	c0001	12732	63	5	16	33	3	6	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	1/0	c0002	12732	57	7	14	26	3	6	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0003	12732	17	1	5	0	3	8	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0004	12732	14	0	8	4	1	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0005	12732	8	8	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0006	12732	7	6	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0007	12732	6	5	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0008	12732	5	4	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0009	12732	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0010	12732	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0011	12732	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0012	12732	4	0	0	4	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0013	12732	3	3	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0014	12732	3	0	2	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0015	12732	3	2	0	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	c0016	12732	2	2	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207