JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKHD1_chr6_51610299_52092613	0/0	c0034	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0035	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0036	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0037	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0038	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0039	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0040	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0041	12225	1	0	0	0	1	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0042	12225	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0043	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0044	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0045	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0046	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0047	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0048	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0049	12225	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0050	12225	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0051	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0052	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0053	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0054	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0055	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0056	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0057	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0058	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0059	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0060	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0061	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0062	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0063	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0064	12225	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0065	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0066	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0067	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0068	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0069	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0070	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0071	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0072	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0073	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0074	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0075	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0076	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0077	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0078	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0079	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0080	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0081	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0082	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0083	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613