JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKHD1_chr6_51610299_52092613	0/0	c0084	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0085	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0086	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0087	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0088	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0089	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0090	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0091	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0092	12225	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0093	12225	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0094	12225	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	c0095	12225	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKIA_chr8_78511340_78610267	1/1	c0001	231	186	68	40	48	10	18	copy fasta	PKIA	chr8	78511340	78610267
PKIB_chr6_122605405_122731373	1/1	c0001	237	312	76	54	130	16	34	copy fasta	PKIB	chr6	122605405	122731373
PKIG_chr20_44577579_44624037	1/1	c0001	231	300	90	72	96	12	28	copy fasta	PKIG	chr20	44577579	44624037
PKLR_chr1_155284293_155306438	0/0	c0001	1725	152	44	22	64	6	16	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/1	c0002	1725	147	44	31	48	3	20	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0003	1725	3	0	0	3	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0004	1725	2	0	1	0	1	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0005	1725	2	0	1	0	0	1	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0006	1725	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0007	1708	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0008	1725	1	0	0	0	0	1	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0009	1725	1	0	1	0	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	c0010	1725	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKMYT1_chr16_2967808_2985446	1/1	c0001	1500	352	74	75	154	14	33	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0002	1500	9	9	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0003	1500	8	8	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0004	1500	7	0	0	7	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0005	1500	3	0	0	3	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0006	1500	3	0	0	3	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0007	1500	2	0	2	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0008	1500	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0009	1500	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0010	1500	1	0	1	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0011	1500	1	0	0	1	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0012	1500	1	0	0	1	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0013	1500	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0014	1500	1	0	0	0	0	1	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	c0015	1500	1	0	0	1	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKM_chr15_72194029_72236190	1/1	c0001	1596	336	86	58	152	7	31	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0002	1596	13	0	2	11	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0003	1596	7	2	4	0	1	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0004	1596	3	0	3	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0005	1596	3	3	0	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0006	1596	3	0	3	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0007	1596	2	0	0	2	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0008	1596	1	0	0	1	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0009	1596	1	1	0	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	c0010	1596	1	0	0	0	0	1	copy fasta	PKM	chr15	72194029	72236190