JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKN1_chr19_14428306_14476859	0/0	c0001	2829	109	4	6	94	3	2	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/1	c0002	2829	88	25	20	7	9	26	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0003	2829	28	16	2	10	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0004	2829	26	1	15	0	2	8	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0005	2829	22	1	14	5	0	2	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0006	2829	14	14	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0007	2829	13	3	8	1	1	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0008	2830	7	0	1	5	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0009	2830	7	0	0	6	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0010	2829	6	6	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0011	2829	5	0	0	5	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0012	2830	4	0	3	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0013	2829	4	0	1	0	3	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0014	2829	3	0	1	2	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0015	2829	2	2	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0016	2829	2	2	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0017	2829	2	1	1	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0018	2829	2	2	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0019	2829	2	0	1	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0020	2829	2	2	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0021	2830	2	1	0	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0022	2830	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0023	2829	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0024	2830	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0025	2829	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0026	2829	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0027	2830	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0028	2829	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0029	2830	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0030	2829	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	1/0	c0031	2829	1	0	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0032	2830	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0033	2831	1	0	0	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0034	2830	1	0	1	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0035	2830	1	0	1	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0036	2830	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0037	2829	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0038	2829	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0039	2829	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0040	2829	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0041	2830	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0042	2830	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0043	2829	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0044	2829	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0045	2829	1	0	0	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0046	2830	1	0	0	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	c0047	2829	1	0	1	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN2_chr1_88679273_88841255	0/1	c0001	2955	128	21	27	67	5	7	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	1/0	c0002	2955	99	2	23	60	4	9	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0003	2955	46	25	6	14	0	1	copy fasta	PKN2	chr1	88679273	88841255