JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKN2_chr1_88679273_88841255	0/0	c0004	2955	27	10	2	14	1	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0005	2955	19	16	2	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0006	2955	5	5	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0007	2955	2	0	0	2	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0008	2955	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0009	2955	1	0	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0010	2955	1	0	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	c0011	2955	1	1	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN3_chr9_128697503_128725916	1/1	c0001	2670	305	58	63	133	14	35	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0002	2670	20	15	5	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0003	2670	7	7	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0004	2670	4	4	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0005	2670	3	0	0	3	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0006	2670	2	0	0	0	0	2	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0007	2670	2	2	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0008	2670	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0009	2670	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0010	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0011	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0012	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0013	2670	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0014	2670	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0015	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0016	2670	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0017	2670	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0018	2670	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0019	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0020	2670	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0021	2670	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0022	2670	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0023	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	c0024	2670	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKNOX1_chr21_42969562_43038931	0/1	c0001	1311	287	74	59	105	18	30	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	1/0	c0002	1311	70	10	12	43	0	4	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	c0003	1311	2	0	0	2	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	c0004	1311	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	c0005	1311	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	c0006	1311	1	0	1	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX2_chr11_125159751_125438389	1/1	c0001	1419	207	69	35	63	6	32	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	c0002	1416	8	0	3	5	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	c0003	1419	3	3	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	c0004	1419	1	1	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	c0005	1419	1	1	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	c0006	1419	1	1	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	c0007	1419	1	1	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKP1_chr1_201278506_201337989	1/1	c0001	2181	140	9	30	73	3	23	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0002	2181	61	9	8	40	3	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0003	2181	28	16	0	5	2	5	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0004	2181	24	16	2	0	1	5	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0005	2181	18	9	7	1	1	0	copy fasta	PKP1	chr1	201278506	201337989