JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKP1_chr1_201278506_201337989	0/0	c0006	2181	14	2	4	5	0	3	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0007	2181	9	9	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0008	2181	7	7	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0009	2181	7	1	0	4	0	2	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0010	2181	6	3	2	0	1	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0011	2181	4	4	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0012	2181	2	0	2	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0013	2181	2	0	0	2	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0014	2181	2	2	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0015	2181	2	2	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0016	2181	1	0	0	0	1	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0017	2181	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0018	2181	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0019	2181	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0020	2181	1	0	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0021	2181	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0022	2181	1	0	0	0	0	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	c0023	2181	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP2_chr12_32785755_32901777	1/1	c0001	2514	263	69	50	101	8	33	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0002	2514	39	13	12	7	2	5	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0003	2514	13	0	0	13	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0004	2514	4	4	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0005	2514	3	3	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0006	2514	3	0	0	0	0	3	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0007	2514	2	0	0	2	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0008	2514	2	0	0	2	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0009	2514	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0010	2514	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0011	2514	1	0	0	0	0	1	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0012	2514	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0013	2514	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0014	2514	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0015	2514	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0016	2514	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0017	2514	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0018	2514	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0019	2514	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0020	2514	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	c0021	2514	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP3_chr11_389209_409908	0/0	c0001	2394	67	16	10	33	2	6	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0002	2394	32	11	5	8	1	7	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0003	2394	31	0	12	12	1	6	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0004	2394	10	8	1	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0005	2394	10	7	1	2	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	1/1	c0006	2394	9	0	5	0	2	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0007	2394	6	3	2	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0008	2394	6	6	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0009	2394	6	0	0	6	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0010	2394	3	2	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0011	2394	3	3	0	0	0	0	copy fasta	PKP3	chr11	389209	409908