JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PKP3_chr11_389209_409908	0/0	c0012	2394	3	0	0	3	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0013	2394	3	3	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0014	2394	2	2	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0015	2394	2	0	1	0	1	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0016	2394	2	0	2	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0017	2394	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0018	2394	1	0	0	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0019	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0020	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0021	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0022	2394	1	0	1	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0023	2394	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0024	2394	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0025	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0026	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0027	2394	1	0	0	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0028	2394	1	0	0	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0029	2394	1	0	0	0	1	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0030	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0031	2394	1	0	1	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0032	2405	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0033	2394	1	0	1	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0034	2394	1	0	0	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0035	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0036	2394	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	c0037	2352	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP4_chr2_158451952_158686429	1/1	c0001	3579	263	58	28	127	17	31	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0002	3579	15	12	2	0	0	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0003	3579	7	0	5	0	1	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0004	3579	4	4	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0005	3579	3	3	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0006	3579	2	0	1	0	0	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0007	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0008	3579	1	0	0	0	0	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0009	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0010	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0011	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0012	3579	1	0	1	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0013	3579	1	0	0	0	0	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0014	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0015	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0016	3579	1	0	1	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0017	3579	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0018	3579	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0019	3579	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	c0020	3579	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PLA1A_chr3_119592885_119634811	1/1	c0001	1371	246	38	54	109	9	34	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0002	1371	103	16	4	80	0	3	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0003	1371	14	0	11	0	2	1	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0004	1371	13	12	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811