JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA1A_chr3_119592885_119634811	0/0	c0005	1371	5	4	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0006	1371	5	5	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0007	1371	4	0	3	0	1	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0008	1371	4	4	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0009	1371	3	3	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0010	1371	3	0	0	3	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0011	1371	3	0	3	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0012	1371	3	3	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0013	1371	2	2	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0014	1371	2	2	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0015	1371	2	2	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0016	1371	2	1	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0017	1371	1	0	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0018	1371	1	0	0	1	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0019	1371	1	0	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0020	1371	1	1	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0021	1371	1	1	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	c0022	1371	1	0	0	1	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA2G10_chr16_14667548_14699308	0/1	c0001	498	398	91	73	172	16	45	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	c0002	498	4	0	1	3	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	c0003	498	1	1	0	0	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	c0004	498	1	0	0	1	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	c0005	498	1	1	0	0	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	c0006	498	1	1	0	0	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	c0007	250	1	0	0	0	0	1	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G12A_chr4_109704989_109735070	1/0	c0001	570	317	92	45	140	6	33	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/1	c0002	570	88	2	27	35	10	13	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	c0003	570	2	0	2	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	c0004	570	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	c0005	570	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	c0006	570	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	c0007	570	1	0	0	1	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	c0008	570	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12B_chr10_72929762_72959806	1/1	c0001	588	322	96	51	129	12	32	copy fasta	PLA2G12B	chr10	72929762	72959806
PLA2G12B_chr10_72929762_72959806	0/0	c0002	588	3	0	0	3	0	0	copy fasta	PLA2G12B	chr10	72929762	72959806
PLA2G12B_chr10_72929762_72959806	0/0	c0003	588	1	0	1	0	0	0	copy fasta	PLA2G12B	chr10	72929762	72959806
PLA2G15_chr16_68240373_68266058	1/1	c0001	1239	174	51	37	56	2	26	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0002	1239	88	33	17	27	2	9	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0003	1239	2	0	0	2	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0004	1239	1	0	0	0	0	1	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0005	1239	1	1	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0006	1239	1	0	0	1	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0007	1239	1	1	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0008	1239	1	0	0	1	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	c0009	1239	1	0	0	1	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G1B_chr12_120317115_120332779	1/1	c0001	447	282	51	43	148	11	27	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G1B_chr12_120317115_120332779	0/0	c0002	447	78	40	11	15	4	8	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G1B_chr12_120317115_120332779	0/0	c0003	447	42	5	10	22	0	5	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G1B_chr12_120317115_120332779	0/0	c0004	447	1	0	0	0	1	0	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G1B_chr12_120317115_120332779	0/0	c0005	447	1	0	0	1	0	0	copy fasta	PLA2G1B	chr12	120317115	120332779