JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF5_chr7_144350402_144385632	0/0	c0038	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0039	4794	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0040	4795	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0041	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0042	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0043	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0044	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0045	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0046	4795	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0047	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0048	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0049	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0050	4795	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0051	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0052	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0053	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0054	4795	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0055	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0056	4795	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0057	4795	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0058	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0059	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0060	4795	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0061	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0062	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0063	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0064	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0065	4795	1	0	0	0	0	1	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0066	4794	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0067	4794	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0068	4795	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0069	4794	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0070	4816	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0071	4816	1	0	1	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0072	4816	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0073	4817	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0074	4816	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0075	4816	1	0	0	1	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	c0076	4816	1	1	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF6_chrX_136660550_136785932	1/1	c0001	2331	234	60	45	98	7	22	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0002	2331	4	4	0	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0003	2331	2	2	0	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0004	2331	2	2	0	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0005	2331	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0006	2331	1	0	0	0	0	1	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0007	2330	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0008	2336	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	c0009	2331	1	0	0	0	0	1	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF7_chr13_111110310_111310732	1/0	c0001	2589	201	74	46	47	11	22	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0002	2589	47	0	6	34	3	4	copy fasta	ARHGEF7	chr13	111110310	111310732