JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2G2A_chr1_19970435_19984618	1/1	c0001	435	363	92	61	157	13	38	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	c0002	435	79	1	13	61	1	3	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	c0003	435	28	7	6	4	3	8	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	c0004	435	12	0	2	8	1	1	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2C_chr1_20158055_20191518	0/0	c0001	450	193	40	29	103	6	15	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	c0002	450	124	18	37	45	8	16	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	c0003	450	83	34	8	25	2	14	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	c0004	346	2	2	0	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	c0005	450	2	0	2	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	c0006	450	1	0	0	1	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	c0007	450	1	0	0	0	0	1	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2D_chr1_20106939_20124536	0/1	c0001	438	338	91	55	152	9	30	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	1/0	c0002	438	117	2	25	61	9	19	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	c0003	438	5	5	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	c0004	438	2	2	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	c0005	438	1	0	0	0	0	1	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	c0006	438	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2E_chr1_19915009_19928617	1/1	c0001	429	368	89	75	150	14	38	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	c0002	429	39	6	4	16	4	9	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	c0003	429	1	0	0	0	0	1	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	c0004	429	1	0	1	0	0	0	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	c0005	429	1	1	0	0	0	0	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2F_chr1_20134323_20155381	1/1	c0001	636	413	100	80	166	18	47	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0002	636	30	0	0	30	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0003	636	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0004	636	1	0	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0005	636	1	0	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0006	636	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0007	636	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0008	636	1	0	0	0	0	1	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	c0009	636	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G3_chr22_31129807_31145508	0/0	c0001	1530	113	6	15	92	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0002	1530	93	0	11	69	2	11	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	1/0	c0003	1530	69	23	20	14	8	3	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/1	c0004	1530	64	31	9	7	1	15	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0005	1530	52	10	18	17	4	3	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0006	1530	26	5	9	4	3	5	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0007	1530	12	9	2	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0008	1530	11	0	0	10	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0009	1530	3	0	0	2	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0010	1530	3	3	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0011	1530	3	3	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0012	1530	2	0	1	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0013	1530	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0014	1530	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0015	1530	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0016	1530	1	1	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0017	1530	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0018	1530	1	1	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0019	1530	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508