JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2G3_chr22_31129807_31145508	0/0	c0020	1530	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0021	1530	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0022	1530	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0023	1530	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0024	1530	1	0	1	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	c0025	1530	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G4A_chr1_186823949_186993981	0/1	c0001	2250	290	78	52	107	12	40	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	1/0	c0002	2250	3	0	1	0	0	1	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0003	2250	2	2	0	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0004	2250	2	1	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0005	2250	2	0	0	0	2	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0006	2250	1	1	0	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0007	2250	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0008	2250	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0009	2250	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0010	2250	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0011	2250	1	0	1	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0012	2250	1	0	0	0	0	1	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0013	2250	1	1	0	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0014	2250	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0015	2250	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	c0016	2250	1	1	0	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4B_chr15_41833847_41853143	0/1	c0001	2346	102	8	31	43	6	13	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0002	2346	102	1	18	77	0	6	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	1/0	c0003	2346	84	33	13	24	2	11	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0004	2346	65	31	12	2	5	15	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0005	2394	6	6	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0006	2346	6	5	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0007	2346	6	0	0	6	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0008	2346	3	2	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0009	2346	3	2	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0010	2346	2	2	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0011	2346	2	2	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0012	2346	2	0	2	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0013	2346	2	0	0	2	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0014	2346	2	0	0	0	0	2	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0015	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0016	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0017	2346	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0018	2346	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0019	2346	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0020	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0021	2346	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0022	2346	1	0	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0023	2346	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0024	2346	1	0	0	0	1	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0025	2346	1	0	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0026	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0027	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0028	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143