JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2G4B_chr15_41833847_41853143	0/0	c0029	2346	1	0	0	0	0	1	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0030	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0031	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0032	2346	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	c0033	2346	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4C_chr19_48042846_48115817	0/0	c0001	1626	70	6	10	46	1	7	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0002	1626	24	6	1	17	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0003	1626	23	0	9	8	3	3	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0004	1626	20	3	6	0	3	8	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	1/0	c0005	1626	16	2	10	0	3	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0006	1626	13	4	2	6	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0007	1626	9	4	2	2	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0008	1626	9	2	1	6	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0009	1626	9	0	3	2	2	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0010	1626	9	8	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0011	1626	7	0	1	4	0	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0012	1626	6	5	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0013	1626	6	0	5	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0014	1626	5	5	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0015	1626	5	0	3	2	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0016	1626	4	0	1	3	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0017	1626	4	1	1	1	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0018	1626	4	4	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/1	c0019	1626	4	0	3	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0020	1626	4	0	0	4	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0021	1626	3	3	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0022	1626	3	1	2	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0023	1626	3	3	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0024	1626	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0025	1626	2	0	2	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0026	1626	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0027	1626	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0028	1626	2	1	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0029	1626	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0030	1626	2	0	0	0	0	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0031	1626	2	0	1	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0032	1626	2	0	0	0	2	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0033	1626	2	0	0	0	0	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0034	1626	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0035	1626	2	0	2	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0036	1626	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0037	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0038	1626	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0039	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0040	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0041	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0042	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0043	1626	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0044	1626	1	0	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0045	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817