JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2G4C_chr19_48042846_48115817	0/0	c0046	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0047	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0048	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0049	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0050	1626	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0051	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0052	1626	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0053	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0054	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0055	1626	1	0	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0056	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0057	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0058	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0059	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0060	1626	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0061	1626	1	0	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0062	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0063	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0064	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0065	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0066	1626	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0067	1626	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0068	1572	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0069	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0070	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0071	1626	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0072	1626	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	c0073	1626	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4D_chr15_42062009_42099562	1/0	c0001	2457	238	52	29	123	11	22	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/1	c0002	2457	122	15	30	57	6	13	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0003	2457	14	0	0	14	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0004	2457	11	2	7	0	1	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0005	2457	10	0	0	10	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0006	2457	8	7	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0007	2457	5	3	1	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0008	2457	3	3	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0009	2457	3	0	0	3	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0010	2457	3	2	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0011	2457	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0012	2457	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0013	2457	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0014	2457	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0015	2457	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0016	2457	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0017	2457	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0018	2457	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0019	2457	1	0	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0020	2457	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0021	2457	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0022	2457	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562