JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2G4D_chr15_42062009_42099562	0/0	c0023	2457	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0024	2457	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	c0025	2457	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4E_chr15_41976582_42026042	0/0	c0001	2520	183	11	33	106	11	22	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/1	c0002	2520	59	26	9	7	1	15	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	1/0	c0003	2520	29	4	11	11	1	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0004	2520	27	1	7	16	1	2	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0005	2520	19	17	1	0	0	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0006	2520	14	1	0	9	0	4	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0007	2520	11	0	0	11	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0008	2520	11	0	0	11	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0009	2520	8	7	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0010	2520	7	7	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0011	2520	5	0	0	5	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0012	2520	4	3	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0013	2520	4	0	1	3	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0014	2520	3	0	0	3	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0015	2520	3	0	0	3	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0016	2520	2	0	0	2	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0017	2520	2	0	0	0	0	2	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0018	2520	2	2	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0019	2520	2	2	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0020	2520	2	0	2	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0021	2520	2	0	0	2	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0022	2520	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0023	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0024	2520	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0025	2520	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0026	2520	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0027	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0028	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0029	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0030	2520	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0031	2520	1	0	0	0	0	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0032	2520	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0033	2520	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0034	2520	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0035	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0036	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0037	2520	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0038	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0039	2520	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0040	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0041	2520	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0042	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0043	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	c0044	2520	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4F_chr15_42134034_42161636	0/0	c0001	2550	88	7	6	59	3	13	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0002	2550	38	1	6	26	2	3	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0003	2550	28	7	2	11	2	6	copy fasta	PLA2G4F	chr15	42134034	42161636