JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLAA_chr9_26898372_26952242	0/0	c0003	2388	2	0	0	2	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	c0004	2388	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	c0005	2388	1	0	0	1	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	c0006	2388	1	0	1	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAC1_chrX_134560838_134663471	1/1	c0001	639	250	65	53	89	11	30	copy fasta	PLAC1	chrX	134560838	134663471
PLAC1_chrX_134560838_134663471	0/0	c0002	639	1	1	0	0	0	0	copy fasta	PLAC1	chrX	134560838	134663471
PLAC1_chrX_134560838_134663471	0/0	c0003	640	1	0	0	1	0	0	copy fasta	PLAC1	chrX	134560838	134663471
PLAC8L1_chr5_146079313_146110577	1/0	c0001	534	252	74	41	103	5	28	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/1	c0002	534	89	0	22	50	3	13	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0003	534	13	12	1	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0004	534	5	5	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0005	534	5	0	0	5	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0006	534	1	0	0	0	0	1	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0007	534	1	1	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0008	534	1	0	1	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	c0009	534	1	0	1	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8_chr4_83085048_83119729	1/1	c0001	348	407	91	70	182	18	44	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	c0002	348	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC9_chr10_80127730_80150359	1/1	c0001	294	449	82	82	220	15	48	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	c0002	294	11	10	1	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	c0003	297	2	0	0	0	1	1	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	c0004	294	1	0	1	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	c0005	294	1	0	0	0	0	1	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	c0006	297	1	1	0	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	c0007	294	1	1	0	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAG1_chr8_56155909_56216273	1/0	c0001	1503	264	76	48	106	9	24	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/1	c0002	1503	41	0	10	19	3	8	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	c0003	1503	1	0	0	0	0	1	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	c0004	1503	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	c0005	1503	1	0	0	0	0	1	copy fasta	PLAG1	chr8	56155909	56216273
PLAGL1_chr6_143935300_144013259	1/1	c0001	1392	339	62	75	152	12	36	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0002	1392	13	13	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0003	1392	13	13	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0004	1392	8	0	0	8	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0005	1392	4	0	0	4	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0006	1392	4	0	0	4	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0007	1392	3	0	1	0	2	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0008	1392	3	3	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0009	1392	2	0	0	2	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0010	1392	1	1	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0011	1392	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0012	1392	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0013	1392	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	c0014	1392	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL2_chr20_32187504_32212743	1/1	c0001	1491	339	85	73	137	11	31	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0002	1491	2	1	1	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0003	1491	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0004	1491	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0005	1491	1	0	0	0	1	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0006	1491	1	0	0	0	0	1	copy fasta	PLAGL2	chr20	32187504	32212743