JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLAGL2_chr20_32187504_32212743	0/0	c0007	1491	1	1	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0008	1491	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAT_chr8_42169718_42212565	0/0	c0001	1689	158	29	34	64	10	21	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	1/1	c0002	1689	138	45	21	53	4	13	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0003	1689	54	2	8	38	2	4	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0004	1689	8	0	0	8	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0005	1689	6	6	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0006	1689	2	2	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0007	1689	2	2	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0008	1689	2	0	2	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0009	1689	2	2	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0010	1689	1	1	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0011	1689	1	0	0	1	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0012	1689	1	0	0	1	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0013	1689	1	0	1	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0014	1689	1	1	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	c0015	1689	1	0	0	1	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAUR_chr19_43643579_43675169	1/1	c0001	1008	336	66	49	175	10	34	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0002	1008	67	14	23	19	4	7	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0003	1008	17	2	8	0	2	5	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0004	1008	9	8	1	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0005	1008	4	3	1	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0006	1008	3	3	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0007	1008	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0009	1008	1	0	0	1	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0010	1008	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0011	1008	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	c0012	1008	1	0	0	1	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAU_chr10_73906132_73922494	0/0	c0001	1296	234	68	51	87	7	21	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	1/0	c0002	1296	91	1	21	50	5	13	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0003	1296	76	9	6	53	0	8	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0004	1296	15	13	1	0	0	1	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0005	1296	4	3	1	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0006	1296	3	0	0	3	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0007	1296	2	0	0	2	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0008	1296	1	0	1	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0009	1296	1	0	0	1	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/1	c0010	1296	1	0	0	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0011	1296	1	0	1	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	c0012	1296	1	0	0	0	0	1	copy fasta	PLAU	chr10	73906132	73922494
PLB1_chr2_28491060_28649142	0/0	c0001	4377	34	7	8	11	2	6	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0002	4377	32	0	9	16	3	4	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	1/1	c0003	4377	30	2	8	8	3	7	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0004	4377	17	15	0	2	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0005	4377	11	2	1	7	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0006	4377	10	0	2	5	1	2	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0007	4377	10	3	4	1	0	2	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0008	4377	7	1	4	2	0	0	copy fasta	PLB1	chr2	28491060	28649142