JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF7_chr13_111110310_111310732	0/0	c0003	2589	4	4	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0004	2589	2	0	0	2	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/1	c0005	2589	2	0	1	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0006	2589	2	0	2	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0007	2589	2	2	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0008	2589	2	0	2	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0009	2589	2	2	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0010	2589	1	1	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0011	2589	1	0	0	1	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0012	2589	1	1	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0013	2589	1	0	1	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0014	2589	1	0	1	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0015	2589	1	1	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0016	2589	1	1	0	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0017	2589	1	0	0	0	0	1	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0018	2589	1	0	1	0	0	0	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF7_chr13_111110310_111310732	0/0	c0019	2589	1	0	0	0	0	1	copy fasta	ARHGEF7	chr13	111110310	111310732
ARHGEF9_chrX_63629967_63790214	1/1	c0001	1572	166	47	29	67	5	16	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	c0002	1573	1	0	0	1	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	c0003	1572	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARID1A_chr1_26691015_26787104	1/1	c0001	6858	130	40	42	13	12	21	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0002	6858	2	1	0	1	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0003	6858	2	2	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0004	6858	2	0	0	0	0	2	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0005	6858	2	2	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0006	6858	1	1	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0007	6858	1	1	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0008	6858	1	0	1	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0009	6858	1	1	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0010	6858	1	0	0	0	1	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0011	6858	1	0	1	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0012	6858	1	0	0	0	0	1	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	c0013	6858	1	0	0	0	1	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1B_chr6_156772378_157215779	1/0	c0001	7119	55	31	10	6	2	5	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/1	c0002	7119	45	11	11	7	8	7	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0003	7119	5	5	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0004	7125	3	3	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0005	7119	2	2	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0006	7122	2	0	2	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0007	7119	2	2	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0008	7119	2	2	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0009	7122	2	2	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0010	7122	1	0	0	0	0	1	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0011	7122	1	0	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0012	7122	1	0	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0013	7122	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0014	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0015	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0016	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0017	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779