JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLB1_chr2_28491060_28649142	0/0	c0059	4377	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0060	4377	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0061	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0062	4377	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0063	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0064	4377	1	0	0	0	1	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0065	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0066	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0067	4377	1	0	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0068	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0069	4377	1	0	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0070	4377	1	0	0	1	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0071	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0072	4377	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0073	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0074	4377	1	0	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	c0075	4377	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLBD1_chr12_14498661_14572883	0/0	c0001	1659	75	14	11	38	4	8	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0002	1659	63	20	8	29	1	5	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0003	1662	43	3	12	24	2	2	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0004	1659	41	3	8	21	1	8	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0005	1659	25	6	5	11	1	2	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0006	1662	21	16	1	4	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/1	c0007	1662	20	0	8	6	3	2	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0008	1659	18	0	12	3	2	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	1/0	c0009	1662	13	10	2	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0010	1659	7	0	3	3	0	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0011	1662	6	3	0	2	0	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0012	1662	5	5	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0013	1659	3	0	0	0	0	3	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0014	1662	3	0	1	2	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0015	1659	2	0	0	0	0	2	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0016	1659	2	2	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0017	1662	2	2	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0018	1662	2	2	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0019	1662	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0020	1659	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0021	1659	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0022	1659	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0023	1659	1	0	0	0	0	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0024	1659	1	0	0	1	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0025	1662	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0026	1662	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	c0027	1662	1	0	1	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD2_chr12_113353587_113396629	0/1	c0001	1770	161	58	17	64	5	16	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	1/0	c0002	1770	87	5	38	32	2	9	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0003	1770	11	4	3	0	1	3	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0004	1770	6	5	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0005	1770	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0006	1770	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629