JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLBD2_chr12_113353587_113396629	0/0	c0007	1770	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0008	1770	1	0	0	1	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0009	1770	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0010	1770	1	0	0	1	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0011	1770	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0012	1770	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0013	1770	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0014	1770	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0015	1770	1	0	0	0	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	c0016	1770	1	0	0	0	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLCB1_chr20_8127266_8889900	0/0	c0001	3651	23	12	3	5	2	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0002	3651	18	10	6	0	1	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0003	3651	17	4	6	5	1	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0004	3651	8	3	3	2	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0005	3651	7	5	1	0	0	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0006	3651	5	4	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0007	3651	4	2	1	1	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0008	3651	3	3	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0009	3651	3	1	0	2	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0010	3651	2	2	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0011	3651	2	2	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0012	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0013	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0014	3651	1	0	0	0	0	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0015	3651	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0016	3651	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0017	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0018	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0019	3651	1	0	0	1	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0020	3651	1	0	0	0	0	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0021	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0022	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0023	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0024	3651	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	c0025	3651	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB2_chr15_40282909_40312935	0/0	c0001	3558	129	56	11	44	3	15	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0002	3558	78	0	9	67	0	2	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0003	3558	63	9	21	22	3	8	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/1	c0004	3558	47	1	13	19	8	5	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	1/0	c0005	3558	40	13	10	7	1	8	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0006	3558	5	5	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0007	3558	3	3	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0008	3558	2	0	2	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0009	3558	2	2	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0010	3558	2	0	0	2	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0011	3558	2	2	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0012	3558	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0013	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0014	3558	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0015	3558	1	1	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935