JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCB2_chr15_40282909_40312935	0/0	c0016	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0017	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0018	3558	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0019	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0020	3558	1	0	0	0	1	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0021	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0022	3558	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0023	3558	1	1	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0024	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0025	3558	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	c0026	3558	1	1	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB3_chr11_64246530_64272923	0/0	c0001	3705	90	49	11	20	0	10	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0002	3705	71	0	12	58	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/1	c0003	3705	53	1	9	27	5	10	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0004	3705	50	9	18	11	5	7	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0005	3705	25	4	2	15	2	2	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0006	3705	25	4	10	10	1	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	1/0	c0007	3705	23	22	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0008	3705	10	1	5	0	3	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0009	3705	7	2	0	5	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0010	3705	3	3	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0011	3705	2	0	0	1	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0012	3705	2	0	0	2	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0013	3705	2	0	2	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0014	3705	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0015	3705	1	1	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0016	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0017	3705	1	0	0	1	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0018	3705	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0019	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0020	3705	1	0	0	1	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0021	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0022	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0023	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0024	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0025	3705	1	1	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0026	3705	1	0	0	1	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0027	3705	1	1	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0028	3705	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0029	3705	1	0	0	1	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0030	3705	1	0	0	1	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0031	3705	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	c0032	3705	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB4_chr20_9064087_9485808	1/0	c0001	3621	79	45	12	13	1	7	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/1	c0002	3621	52	8	15	14	3	11	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	c0003	3621	4	4	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	c0004	3621	1	0	0	1	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	c0005	3621	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	c0006	3621	1	0	1	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	c0007	3621	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808