JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCB4_chr20_9064087_9485808	0/0	c0008	3621	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCD1_chr3_38002496_38034642	1/1	c0001	2271	240	44	54	108	10	22	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0002	2271	33	1	0	30	0	2	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0003	2271	31	9	10	7	2	3	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0004	2271	10	9	1	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0005	2271	7	7	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0006	2271	7	0	0	0	0	7	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0007	2271	6	5	1	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0008	2271	5	5	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0009	2271	2	2	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0010	2271	2	2	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0011	2271	2	0	1	0	0	1	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0012	2271	2	0	2	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0013	2271	2	2	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0014	2271	2	0	0	2	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0015	2271	2	2	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0016	2271	1	0	0	0	0	1	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0017	2271	1	1	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0018	2271	1	1	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0019	2271	1	1	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0020	2271	1	0	0	0	0	1	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0021	2271	1	1	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0022	2271	1	0	1	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0023	2271	1	0	0	0	0	1	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	c0024	2271	1	0	0	1	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD3_chr17_45103959_45137515	0/0	c0001	2370	214	22	47	120	6	19	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0002	2370	78	13	8	51	2	4	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	1/0	c0003	2370	43	12	12	3	6	9	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0004	2370	31	0	9	8	2	12	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0005	2370	12	10	2	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0006	2370	10	10	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0007	2370	9	9	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0008	2370	8	1	1	1	2	3	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0009	2370	4	4	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0010	2370	3	0	0	3	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0011	2370	3	0	2	0	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0012	2370	3	0	0	3	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0013	2370	2	2	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0014	2370	2	0	0	2	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0015	2370	2	0	0	0	0	2	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0016	2370	2	2	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0017	2370	2	2	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0018	2370	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0019	2370	1	0	1	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0020	2370	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0021	2370	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0022	2370	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0023	2370	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/1	c0024	2370	1	0	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	c0025	2370	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515