JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCD4_chr2_218602899_218642175	1/0	c0001	2289	174	82	24	45	4	18	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/1	c0002	2289	115	5	32	57	4	16	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	c0003	2289	3	3	0	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	c0004	2289	3	3	0	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	c0005	2289	1	0	0	1	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	c0006	2289	1	0	0	1	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	c0007	2289	1	1	0	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCE1_chr10_93988931_94337823	0/0	c0001	6909	12	4	2	4	1	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0002	6909	10	2	2	6	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	1/0	c0003	6909	10	1	3	3	0	2	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0004	6909	8	5	0	2	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0005	6909	7	2	1	4	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0006	6909	6	3	1	2	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/1	c0007	6909	5	0	2	0	2	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0008	6909	4	2	0	2	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0009	6909	3	0	3	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0010	6909	3	3	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0011	6909	3	2	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0012	6909	3	0	3	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0013	6909	2	0	1	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0014	6909	2	0	1	0	0	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0015	6909	2	1	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0016	6909	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0017	6909	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0018	6909	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0019	6909	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0020	6909	2	0	1	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0021	6909	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0022	6909	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0023	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0024	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0025	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0026	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0027	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0028	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0029	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0030	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0031	6909	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0032	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0033	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0034	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0035	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0036	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0037	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0038	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0039	6909	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0040	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0041	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0042	6909	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0043	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823