JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCE1_chr10_93988931_94337823	0/0	c0044	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0045	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	c0046	6909	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCG1_chr20_41132543_41182626	0/1	c0001	3876	280	75	40	136	8	20	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	1/0	c0002	3876	68	2	22	32	3	8	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0003	3876	28	12	10	1	3	2	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0004	3876	2	0	1	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0005	3876	2	0	0	0	2	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0006	3876	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0007	3876	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0008	3876	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0009	3876	1	0	1	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0010	3876	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0011	3876	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0012	3876	1	0	0	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0013	3876	1	0	0	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0014	3876	1	0	0	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	c0015	3876	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG2_chr16_81774291_81967685	0/0	c0001	3798	59	5	18	29	1	6	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0002	3798	38	14	3	14	0	7	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/1	c0003	3798	30	0	2	22	0	5	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0004	3798	23	3	3	11	1	5	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0005	3798	14	9	1	2	0	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	1/0	c0006	3798	10	5	1	0	1	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0007	3798	10	5	1	2	1	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0008	3798	9	0	4	4	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0009	3798	8	0	3	2	1	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0010	3798	6	0	1	3	0	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0011	3798	6	0	0	6	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0012	3798	6	0	0	1	3	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0013	3798	6	0	2	4	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0014	3798	6	4	1	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0015	3798	4	0	2	0	1	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0016	3798	4	2	1	0	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0017	3798	4	4	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0018	3798	4	1	2	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0019	3798	4	0	0	3	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0020	3798	4	0	3	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0021	3798	3	3	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0022	3798	3	0	2	0	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0023	3798	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0024	3798	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0025	3798	2	1	0	1	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0026	3798	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0027	3798	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0028	3798	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0029	3798	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0030	3798	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0031	3798	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0032	3798	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685