JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCG2_chr16_81774291_81967685	0/0	c0033	3798	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0034	3798	2	0	0	0	2	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0035	3798	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0036	3798	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0037	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0038	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0039	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0040	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0041	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0042	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0043	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0044	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0045	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0046	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0047	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0048	3798	1	0	0	1	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0049	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0050	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0051	3798	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0052	3798	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0053	3798	1	0	0	0	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0054	3798	1	0	0	1	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0055	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0056	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0057	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0058	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0059	3798	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0060	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0061	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0062	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0063	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0064	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0065	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0066	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0067	3798	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0068	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0069	3798	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0070	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0071	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0072	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0073	3798	1	0	0	0	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0074	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0075	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0076	3798	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	c0077	3798	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCH1_chr3_155474881_155750071	0/0	c0001	5058	106	34	10	45	2	15	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0002	5058	66	21	10	31	0	4	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0003	5058	28	13	8	2	2	3	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	1/0	c0004	5058	20	8	6	0	1	4	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0005	5058	9	0	6	3	0	0	copy fasta	PLCH1	chr3	155474881	155750071