JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCH1_chr3_155474881_155750071	0/0	c0006	5058	8	0	0	8	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0007	5058	5	5	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0008	5058	4	0	2	0	1	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/1	c0009	5058	3	0	1	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0010	5058	2	0	2	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0011	5058	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0012	5058	1	0	1	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0013	5058	1	0	1	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0014	5058	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0015	5058	1	0	1	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0016	5058	1	1	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0017	5058	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0018	5058	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0019	5058	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0020	5058	1	1	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0021	5058	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0022	5058	1	1	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	c0023	5058	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH2_chr1_2471289_2510532	0/0	c0001	4251	166	49	33	57	8	19	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0002	4251	81	8	13	49	4	7	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0003	4251	53	7	11	27	1	7	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0004	4251	9	0	0	9	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0005	4251	7	4	0	1	0	2	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0006	4251	6	6	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0007	4251	5	0	0	4	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0008	4251	3	3	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0009	4251	3	0	2	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0010	4251	3	1	2	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0011	4251	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/1	c0012	4251	2	0	0	0	1	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0013	4251	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0014	4251	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0015	4251	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0016	4251	2	2	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0017	4251	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0018	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0019	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0020	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0021	4251	1	0	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0022	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0023	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0024	4251	1	0	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0025	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0026	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0027	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0028	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0029	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0030	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0031	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0032	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532