JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCH2_chr1_2471289_2510532	0/0	c0033	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0034	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0035	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0036	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0037	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0038	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0039	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0040	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0041	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0042	4251	1	0	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0043	4251	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0044	4251	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0045	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0046	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0047	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0048	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0049	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	c0050	4251	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCL1_chr2_197799593_198154863	0/0	c0001	3288	65	8	15	33	2	7	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0002	3288	56	9	14	27	1	5	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0003	3288	47	6	8	29	2	2	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0004	3288	12	10	1	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0005	3288	11	11	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0006	3288	5	5	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0007	3288	4	3	0	0	1	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0008	3288	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0009	3288	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0010	3288	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	c0011	3288	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL2_chr3_16879955_17095604	0/0	c0001	3384	89	32	13	29	3	12	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	1/0	c0002	3384	86	35	13	24	4	9	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0003	3384	33	10	13	5	2	3	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0004	3384	15	0	6	5	0	4	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/1	c0005	3384	4	0	0	0	1	2	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0006	3384	4	0	0	3	0	1	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0007	3384	3	2	1	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0008	3384	2	0	1	0	0	1	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0009	3384	2	2	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0010	3384	1	0	0	0	0	1	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0011	3384	1	1	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0012	3384	1	1	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0013	3384	1	1	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0014	3384	1	1	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0015	3384	1	0	0	1	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0016	3384	1	0	1	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0017	3384	1	0	0	1	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0018	3384	1	0	1	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0019	3384	1	1	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0020	3384	1	0	0	0	0	1	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	c0021	3384	1	0	1	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604