JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARID1B_chr6_156772378_157215779	0/0	c0018	7119	1	0	0	1	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0019	7119	1	0	0	1	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0020	7119	1	0	0	0	0	1	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0021	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0022	7119	1	0	0	1	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0023	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0024	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0025	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0026	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0027	7119	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0028	7122	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0029	7122	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0030	7122	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0031	7122	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0032	7122	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0033	7128	1	0	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0034	7128	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0035	7125	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0036	7125	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0037	7116	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0038	7116	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0039	7116	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0040	7140	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	c0041	7125	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID2_chr12_45724706_45913037	1/1	c0001	5508	258	41	62	103	12	38	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0002	5508	20	19	1	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0003	5508	12	0	0	12	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0004	5508	5	5	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0005	5508	3	0	0	3	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0006	5508	3	3	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0007	5508	2	0	0	2	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0008	5508	2	0	0	2	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0009	5508	2	2	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0010	5508	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0011	5508	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0012	5508	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0013	5508	1	0	1	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0014	5508	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0015	5508	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0016	5508	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0017	5508	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0018	5508	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0019	5508	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	c0020	5508	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID3A_chr19_921035_980939	0/0	c0001	1782	79	6	17	42	5	9	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	c0002	1782	55	3	14	35	0	3	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	c0003	1782	55	20	7	17	2	9	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	c0004	1782	25	1	4	18	1	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	c0005	1782	20	4	12	0	1	3	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/1	c0006	1782	17	10	0	3	0	3	copy fasta	ARID3A	chr19	921035	980939