JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLCXD1_chrX_276381_308356	0/0	c0001	972	90	14	9	58	4	5	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	1/1	c0002	972	33	1	12	13	0	5	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0003	972	31	16	9	5	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0004	972	3	0	0	3	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0005	972	2	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0006	972	2	0	0	2	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0007	972	2	0	0	2	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0008	972	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0009	972	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0010	972	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0011	972	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0012	972	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0013	972	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0014	972	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0015	973	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0016	972	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0017	973	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0018	971	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0019	972	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	c0020	972	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD2_chr3_111669676_111732007	1/1	c0001	1026	310	83	60	112	13	40	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	c0002	1026	8	0	0	8	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	c0003	1026	2	0	1	0	1	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	c0004	1026	2	0	0	2	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	c0005	1026	1	0	1	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	c0006	1026	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD3_chr5_41301952_41515601	1/1	c0001	966	220	66	44	84	10	14	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	c0002	966	18	17	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	c0003	966	2	0	2	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	c0004	966	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	c0005	966	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	c0006	966	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	c0007	966	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCZ1_chr12_18678180_18743012	1/1	c0001	1827	317	90	56	125	15	29	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	c0002	1827	3	0	0	3	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	c0003	1827	2	0	0	0	1	1	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	c0004	1827	1	0	0	1	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	c0005	1827	1	0	0	1	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	c0006	1827	1	1	0	0	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	c0007	1827	1	1	0	0	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLD1_chr3_171595404_171815483	1/1	c0001	3225	115	20	21	51	3	18	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0002	3225	75	30	15	21	5	4	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0003	3225	52	13	6	22	2	9	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0004	3225	9	0	4	5	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0005	3225	9	9	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0006	3225	4	0	0	4	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0007	3225	4	0	3	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0008	3225	4	4	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0009	3225	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0010	3225	2	0	0	2	0	0	copy fasta	PLD1	chr3	171595404	171815483