JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLD1_chr3_171595404_171815483	0/0	c0011	3225	2	0	0	0	0	2	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0012	3225	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0013	3225	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0014	3225	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0015	3225	2	0	2	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0016	3225	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0017	3225	1	0	0	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0018	3225	1	0	0	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0019	3225	1	0	1	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0020	3225	1	0	0	0	0	1	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0021	3225	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0022	3225	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	c0023	3225	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD2_chr17_4802152_4828430	0/0	c0001	2802	102	0	4	77	1	20	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0002	2802	84	18	16	43	3	4	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/1	c0003	2802	74	6	25	26	4	12	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0004	2802	34	12	6	15	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0005	2802	27	5	4	11	3	4	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0006	2802	17	5	4	4	2	2	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0007	2802	16	1	0	14	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	1/0	c0008	2802	10	8	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0009	2802	8	5	2	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0010	2802	8	8	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0011	2802	7	0	5	1	1	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0012	2802	6	6	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0013	2802	4	0	2	0	0	2	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0014	2802	3	1	2	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0015	2802	3	3	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0016	2802	3	2	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0017	2802	3	3	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0018	2802	2	2	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0019	2802	2	1	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0020	2802	2	2	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0021	2802	2	0	0	2	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0022	2802	2	0	2	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0023	2802	2	0	2	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0024	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0025	2802	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0026	2802	1	0	0	0	1	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0027	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0028	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0029	2814	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0030	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0031	2802	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0032	2819	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0033	2802	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0034	2802	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0035	2802	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0036	2802	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0037	2802	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430