JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLD2_chr17_4802152_4828430	0/0	c0038	2802	1	0	0	0	1	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0039	2802	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0040	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0041	2802	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0042	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0043	2802	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0044	2802	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0045	2802	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0046	2802	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0047	2802	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0048	2802	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0049	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0050	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0051	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	c0052	2802	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD3_chr19_40343695_40383485	1/1	c0001	1473	349	93	62	146	18	28	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0002	1473	4	4	0	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0003	1473	3	1	1	0	0	1	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0004	1473	2	2	0	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0005	1473	2	0	2	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0006	1473	1	0	1	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0007	1473	1	0	1	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0008	1473	1	0	0	0	0	1	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	c0009	1473	1	0	1	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD4_chr14_104919879_104938236	1/1	c0001	1521	199	54	39	67	7	30	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0002	1521	186	22	37	109	5	13	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0003	1521	18	0	2	11	0	5	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0004	1521	11	11	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0005	1521	2	2	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0006	1521	2	0	0	2	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0007	1521	1	0	1	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0008	1521	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0009	1521	1	1	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0010	1521	1	0	0	0	0	1	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0011	1521	1	0	0	0	0	1	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0012	1521	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0013	1521	1	0	1	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	c0014	1521	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD5_chr1_242077986_242529697	1/1	c0001	1611	121	43	25	43	1	7	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	c0002	1611	57	27	9	9	3	9	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	c0003	1611	5	1	2	2	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	c0004	1611	2	0	0	2	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	c0005	1611	2	0	2	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	c0006	1611	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD6_chr17_17195995_17211333	1/1	c0001	759	427	89	80	188	18	50	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	c0002	759	4	3	1	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	c0003	759	2	2	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	c0004	759	1	0	1	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	c0005	759	1	0	0	1	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	c0006	759	1	0	0	1	0	0	copy fasta	PLD6	chr17	17195995	17211333