JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEC_chr8_143910153_143944597	0/0	c0201	13644	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	c0202	13644	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	c0203	13644	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	c0204	13644	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143978529	1/0	c0001	13602	33	1	4	20	2	5	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0002	13602	23	1	8	7	3	4	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0003	13602	8	7	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0004	13602	8	0	8	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0005	13602	7	0	0	7	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0006	13602	6	1	5	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0007	13602	5	5	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0008	13602	5	5	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0009	13602	4	0	1	3	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0010	13602	3	0	3	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0011	13603	3	0	0	0	0	3	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0012	13602	3	3	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0013	13602	3	0	0	3	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0014	13603	3	0	1	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0015	13602	3	0	0	3	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0016	13602	3	3	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0017	13602	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0018	13602	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0019	13602	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0020	13602	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0021	13602	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0022	13602	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0023	13602	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0024	13602	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0025	13602	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0026	13602	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0027	13602	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/1	c0028	13602	2	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0029	13602	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0030	13602	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0031	13602	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0032	13602	2	0	1	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0033	13602	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0034	13603	2	0	0	0	0	2	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0035	13602	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0036	13602	2	0	1	0	1	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0037	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0038	13603	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0039	13602	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0040	13602	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0041	13602	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0042	13602	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0043	13602	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0044	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0045	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0046	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529