JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEC_chr8_143910153_143978529	0/0	c0147	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0148	13602	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0149	13602	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0150	13603	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0151	13603	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0152	13603	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0153	13603	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0154	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0155	13603	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0156	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0157	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0158	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0159	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0160	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0161	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0162	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0163	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0164	13602	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0165	13602	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0166	13602	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0167	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0168	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0169	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0170	13602	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0171	13602	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0172	13603	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0173	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0174	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0175	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0176	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0177	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	c0178	13602	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEK2_chr14_67381984_67417165	1/1	c0001	1062	339	81	65	157	5	29	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0002	1062	3	3	0	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0003	1062	3	0	0	3	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0004	1062	2	2	0	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0005	1062	1	0	0	0	1	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0006	1062	1	0	1	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0007	1062	1	1	0	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0008	1062	1	0	1	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0009	1062	1	1	0	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0010	1062	1	0	0	0	0	1	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	c0011	1062	1	0	1	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEKHA1_chr10_122369708_122437345	0/1	c0001	1215	245	60	32	116	8	28	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	c0002	1215	91	21	17	37	6	10	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	1/0	c0003	1215	12	3	3	0	4	1	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	c0004	1215	3	2	1	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	c0005	1215	2	0	1	0	0	1	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	c0006	1215	2	0	2	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	c0007	1215	1	1	0	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345