JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHA1_chr10_122369708_122437345	0/0	c0008	1215	1	1	0	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	c0009	1215	1	0	0	1	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA2_chr8_38896346_38978912	1/1	c0001	1278	365	87	68	153	16	39	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0002	1278	4	4	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0003	1278	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0004	1278	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0005	1278	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0006	1278	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0007	1278	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0008	1278	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	c0009	1278	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA3_chr2_178475457_178521463	1/1	c0001	903	209	45	50	76	8	28	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	c0002	903	149	20	18	94	2	15	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	c0003	903	22	21	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	c0004	903	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	c0005	903	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA4_chr19_48832097_48873617	1/1	c0001	2340	132	8	38	57	7	20	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0002	2340	90	39	21	19	6	5	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0003	2340	26	24	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0004	2340	10	6	1	3	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0005	2340	5	3	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0006	2340	4	0	0	4	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0007	2340	4	0	1	0	1	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0008	2340	4	0	0	4	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0009	2340	3	0	0	3	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0010	2340	3	3	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0011	2340	3	0	0	3	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0012	2340	2	0	2	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0013	2340	2	0	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0014	2340	2	0	0	2	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0015	2340	1	0	1	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0016	2340	1	0	0	0	0	1	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0017	2340	1	0	0	1	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0018	2340	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0019	2340	1	0	1	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0020	2340	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0021	2340	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0022	2340	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0023	2340	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	c0024	2340	1	0	1	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA5_chr12_19124733_19381400	1/1	c0001	3849	281	81	47	123	6	22	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0002	3849	11	0	2	8	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0003	3849	9	0	9	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0004	3849	2	0	0	2	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0005	3849	2	0	2	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0006	3849	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0007	3849	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0008	3849	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0009	3849	1	1	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0010	3849	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400