JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHA5_chr12_19124733_19381400	0/0	c0011	3849	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0012	3849	1	1	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0013	3849	1	1	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0014	3849	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0015	3849	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	c0016	3849	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA6_chr1_204213853_204364929	0/0	c0001	3147	93	17	33	31	3	9	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	1/0	c0002	3147	61	20	8	18	2	12	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/1	c0003	3147	44	8	16	15	1	3	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0004	3147	21	18	3	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0005	3147	9	1	1	5	2	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0006	3147	8	8	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0007	3147	5	5	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0008	3147	3	3	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0009	3147	3	3	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0010	3147	2	0	0	2	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0011	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0012	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0013	3147	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0014	3147	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0015	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0016	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0017	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0018	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0019	3147	1	0	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0020	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0021	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0022	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0023	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0024	3147	1	0	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0025	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0026	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0027	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0028	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0029	3147	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0030	3147	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	c0031	3147	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA7_chr11_16772297_17019414	0/1	c0001	3816	86	22	21	33	1	8	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0002	3816	23	1	1	16	1	4	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	1/0	c0003	3816	23	9	10	0	0	3	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0004	3816	12	12	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0005	3816	12	7	3	0	2	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0006	3816	11	1	2	7	0	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0007	3816	6	5	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0008	3816	5	1	1	1	2	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0009	3816	5	3	1	0	1	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0010	3816	5	0	2	2	0	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0011	3816	4	4	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0012	3816	3	0	0	3	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0013	3816	3	0	2	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414