JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHA7_chr11_16772297_17019414	0/0	c0014	3816	3	3	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0015	3816	3	3	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0016	3816	3	3	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0017	3816	2	0	2	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0018	3816	2	2	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0019	3816	2	0	0	0	0	2	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0020	3816	2	2	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0021	3816	2	2	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0022	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0023	3816	1	0	0	0	0	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0024	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0025	3816	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0026	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0027	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0028	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0029	3816	1	0	0	0	0	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0030	3816	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0031	3816	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0032	3816	1	0	0	0	0	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0033	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0034	3816	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0035	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0036	3816	1	0	0	0	1	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0037	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0038	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0039	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0040	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0041	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0042	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0043	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0044	3816	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0045	3816	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0046	3816	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0047	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	c0048	3816	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA8_chr7_30023412_30089650	1/1	c0001	1560	126	33	23	50	6	12	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	c0002	1560	103	40	14	39	4	6	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	c0003	1560	3	2	1	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	c0004	1560	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	c0005	1560	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHB1_chr11_73641581_73667819	1/1	c0001	732	405	88	73	176	16	50	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	c0002	742	3	3	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	c0003	732	3	0	3	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	c0004	732	2	0	0	2	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	c0005	732	1	1	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	c0006	732	1	0	0	1	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	c0007	732	1	0	0	1	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB2_chr2_131100336_131154845	1/1	c0001	669	263	94	54	70	12	31	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	c0002	669	1	0	0	0	0	1	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHD1_chr14_69479728_69536551	1/0	c0001	1521	217	65	34	81	12	24	copy fasta	PLEKHD1	chr14	69479728	69536551