JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHD1_chr14_69479728_69536551	0/0	c0002	1521	41	2	3	27	2	7	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/1	c0003	1521	40	14	10	7	4	4	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0004	1521	5	5	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0005	1521	2	0	0	0	0	2	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0006	1521	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0007	1521	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0008	1521	1	0	0	0	0	1	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0009	1521	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0010	1521	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0011	1521	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0012	1521	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0013	1521	1	0	1	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0014	1521	1	0	0	0	0	1	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0015	1521	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0016	1521	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0017	1521	1	0	0	0	0	1	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	c0018	1521	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHF1_chr19_29660461_29680477	1/1	c0001	840	421	80	81	194	14	50	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0002	840	6	6	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0003	840	5	4	1	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0004	840	2	2	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0005	840	1	0	0	1	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0006	840	1	0	0	1	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0007	840	1	1	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0008	840	1	0	0	1	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0009	840	1	0	0	1	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	c0010	840	1	1	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF2_chr8_95128785_95161685	1/1	c0001	750	382	100	80	142	12	46	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	c0002	750	2	0	0	0	0	2	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHG1_chr6_150594885_150848665	0/0	c0001	4158	40	12	7	18	0	3	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/1	c0002	4158	37	6	6	20	0	4	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	1/0	c0003	4158	20	1	13	2	1	2	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0004	4158	16	8	3	0	3	2	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0005	4158	13	1	5	2	2	3	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0006	4158	12	4	5	0	1	2	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0007	4158	12	0	8	3	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0008	4158	10	1	1	6	0	2	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0009	4158	9	0	0	9	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0010	4158	7	0	0	6	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0011	4158	7	0	0	7	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0012	4158	5	1	0	4	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0013	4158	5	1	0	4	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0014	4158	4	0	0	0	0	4	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0015	4158	4	0	0	3	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0016	4158	4	0	0	4	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0017	4158	3	3	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0018	4158	3	1	0	2	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0019	4158	3	0	2	0	1	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0020	4158	3	3	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0021	4158	3	1	0	2	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665