JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHG1_chr6_150594885_150848665	0/0	c0022	4158	3	3	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0023	4158	2	1	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0024	4158	2	2	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0025	4158	2	1	0	0	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0026	4158	2	2	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0027	4158	2	2	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0028	4158	2	2	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0029	4158	2	0	0	2	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0030	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0031	4158	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0032	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0033	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0034	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0035	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0036	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0037	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0038	4158	1	0	0	0	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0039	4158	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0040	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0041	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0042	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0043	4158	1	0	0	0	1	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0044	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0045	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0046	4158	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0047	4158	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0048	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0049	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0050	4158	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0051	4158	1	0	0	0	1	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0052	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0053	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0054	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0055	4158	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0056	4158	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0057	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0058	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0059	4158	1	0	0	0	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0060	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0061	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0062	4158	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0063	4158	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	c0064	4158	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG2_chr19_39407669_39433415	1/1	c0001	4161	117	6	22	71	5	11	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	c0002	4161	82	5	12	54	4	7	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	c0003	4161	81	25	11	38	3	4	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	c0004	4161	31	9	10	5	3	4	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	c0005	4161	18	7	6	2	1	2	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	c0006	4161	6	6	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	c0007	4161	5	5	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415