JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHG3_chr14_64699424_64755249	0/0	c0002	3660	23	14	3	1	0	5	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0003	3660	20	3	3	8	0	6	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/1	c0004	3660	20	10	4	0	0	5	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0005	3660	15	2	1	9	0	3	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0006	3660	5	5	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0007	3660	5	3	2	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0008	3660	4	4	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0009	3660	3	3	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0010	3660	3	0	2	0	1	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0011	3660	2	0	2	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0012	3660	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0013	3660	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0014	3660	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0015	3660	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0016	3660	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0017	3660	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0018	3660	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0019	3660	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0020	3660	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	c0021	3660	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG4B_chr5_87168_194966	0/0	c0001	4884	36	4	14	13	2	3	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0002	4884	19	2	6	8	1	2	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0003	4884	12	0	8	1	1	2	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0004	4884	12	2	2	6	1	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0005	4884	9	0	2	5	1	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/1	c0006	4884	8	0	2	0	1	4	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0007	4884	7	7	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0008	4884	7	1	5	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0009	4884	5	0	4	0	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	1/0	c0010	4884	5	0	0	3	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0011	4884	3	3	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0012	4884	3	3	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0013	4884	3	0	0	3	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0014	4884	3	2	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0015	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0016	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0017	4884	2	0	1	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0018	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0019	4884	2	0	1	0	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0020	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0021	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0022	4884	2	0	0	2	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0023	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0024	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0025	4884	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0026	4884	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0027	4884	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0028	4884	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0029	4884	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	c0030	4884	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966