JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHG4B_chr5_87168_194966	0/0	c0081	4884	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4_chr16_67274532_67294480	1/1	c0001	3576	215	25	56	96	15	21	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0002	3576	54	46	5	0	1	2	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0003	3576	9	1	7	0	1	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0004	3576	6	3	0	0	1	2	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0005	3576	5	0	0	5	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0006	3576	4	3	0	1	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0007	3576	3	3	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0008	3576	3	3	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0009	3576	2	1	1	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0010	3576	2	0	0	0	0	2	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0011	3576	2	0	2	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0012	3576	2	2	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0013	3576	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0014	3576	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0015	3576	1	0	0	1	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0016	3576	1	0	0	1	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0017	3576	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0018	3576	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0019	3576	1	0	1	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0020	3576	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0021	3576	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0022	3576	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0023	3576	1	0	1	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0024	3576	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0025	3576	1	0	1	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0026	3576	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	c0027	3576	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG5_chr1_6462122_6496667	1/1	c0001	3021	164	15	31	81	3	32	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0002	3021	20	20	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0003	3021	15	15	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0004	3018	14	8	3	0	0	3	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0005	3021	10	0	6	3	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0006	3015	7	2	3	1	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0007	3018	7	7	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0008	3021	6	5	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0009	3021	5	0	0	5	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0010	3018	4	4	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0011	3018	4	4	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0012	3018	3	3	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0013	3021	3	3	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0014	3021	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0015	3021	1	0	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0016	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0017	3018	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0018	3021	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0019	3021	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0020	3021	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0021	3021	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0022	3021	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667